PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_A5FB7CFA5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 481aa    MW: 50412.1 Da    PI: 6.1879
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_A5FB7CFA5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.8e-31229287259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Traes_6AL_A5FB7CFA5.1 229 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 287
                            699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-31222289IPR003657WRKY domain
PROSITE profilePS5081133.178223289IPR003657WRKY domain
SuperFamilySSF1182901.31E-26226289IPR003657WRKY domain
SMARTSM007741.5E-38228288IPR003657WRKY domain
PfamPF031064.4E-26230287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MCDYFLKRAE GHQQAGDLTD IVRAGGAMPA GSADPPSTAT EWLQLPADPI LFPLPQTSSS  60
DGAGPSSADA LGDPFSGLPD AFSTDYPSSS GSAAADFFDA VQDAMGVGMA KQVGFVDTTG  120
CGGGGTTAGA GGGFLDMRNH HMFPGEMPMR GLSPYALMGG GAAKLGVPMA GHGLAAGPCA  180
FDAVAGLQMS SSPRGGGIKR RKNQARKVVC IPAPAAAVAG KTTGEVVPSD LWAWRKYGQK  240
PIKGSPYPRG YYRCSSSKGC PARKQVERSR TDPNMLVITY TSEHNHPWPT QRNVLAGSTR  300
SHYAKNSSNT DAASSKNSKN SSRNQHKPVV KAESKDQSAA TPAATSTTTT ATTSTGNNTP  360
PMAVKEEAEM ERRIGGDTTA TVGYYSDHLL QQMFSQSYRP MMPEEAGGYH QQDDFFADLT  420
ELDSDPVSLI FSTEYMEARP GKEKAAAKDD VDSLFMMDWA PASAAVTTSA GSALEQGDMG  480
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-182272891374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689940.0AK368994.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083H02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572849.11e-162PREDICTED: probable WRKY transcription factor 35
SwissprotO647478e-71WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLW5G9A00.0W5G9A0_WHEAT; Uncharacterized protein
STRINGMLOC_64446.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-63WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]